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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44526607_44534108_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44526607 - 44534108
Intron Length:
7502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TGCTTGTTGATT
Flanking Amino Acid:
RYRRAESSKLRRLSGTIDVI
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
77.9
0.63
0.9
71.9
38
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
50.5
0.1
2.1
70.59
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003042
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017943
44510392 - 44554389
43998