Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44534203_44535239_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44534203 - 44535239

Intron Length:

1037

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTTATAC

5'SS Class:

major

3'SS Sequence:

TGATATTTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTTTACGTAGCA

Flanking Amino Acid:

RRANENSNIQVLSERSNPEV

Intron Amino Acid Position:

378

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.9

0.26

1.2

58.7

34.6

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

79.3

0.66

0.9

72.6

41.9

Minor 5ss

40.8

-1

2.8

51.2

45.4

Minor BPS

51.7

0.05

2.4

76.46

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003042

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039333

44510807 - 44540449

29643

ENSAPLT00000017943

44510392 - 44554389

43998

ENSAPLT00000003131

44510392 - 44554566

44175

ENSAPLT00000041552

44509397 - 44554574

45178