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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44535860_44539786_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44535860 - 44539786
Intron Length:
3927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TTTACTATAACT
Flanking Amino Acid:
PPVSLNSWKSGIPITVPPPG
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
80
0.68
0.8
77.7
36.7
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
71.2
0.74
1.6
89.89
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003042
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041552
44509397 - 44554574
45178
ENSAPLT00000039333
44510807 - 44540449
29643
ENSAPLT00000017943
44510392 - 44554389
43998