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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44539814_44540390_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44539814 - 44540390
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTTG
5'SS Class:
strong_major
3'SS Sequence:
TTAATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCCCCCCAATT
Flanking Amino Acid:
PGIPITVPPPGFPPPPGGPP
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72.1
40.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.5
0.8
0.8
80.1
37.1
Minor 5ss
46.8
-0.3
2.9
64.1
47.4
Minor BPS
52.4
0.15
1.9
74.68
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003042
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039333
44510807 - 44540449
29643
ENSAPLT00000017943
44510392 - 44554389
43998
ENSAPLT00000003131
44510392 - 44554566
44175
ENSAPLT00000041552
44509397 - 44554574
45178