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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44540446_44542178_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44540446 - 44542178
Intron Length:
1733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATGAATT
Flanking Amino Acid:
PPPSLIPTIESGHSSGYDSR
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
83.2
28.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
89
0.88
0.6
84
24.2
Minor 5ss
34.9
-1.7
2.8
45.4
42.7
Minor BPS
62.1
0.46
1.8
83.38
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003042
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041552
44509397 - 44554574
45178
ENSAPLT00000017943
44510392 - 44554389
43998
ENSAPLT00000003131
44510392 - 44554566
44175