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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44542235_44549263_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44542235 - 44549263
Intron Length:
7029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
CCGCACCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTCAC
U12 Branch Point Sequence:
TTTTCTTTAGTC
Flanking Amino Acid:
RSVRAFSYGSGSAPSWSSLM
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.2
37.4
Major BPS
67.1
0.43
1.2
69.3
37.7
Major PPT
69.3
0.44
0.9
61.3
34.7
Minor 5ss
30.7
-2.2
2.5
31.8
35.8
Minor BPS
73.5
0.72
1.4
82.01
32.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003042
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041552
44509397 - 44554574
45178
ENSAPLT00000017943
44510392 - 44554389
43998
ENSAPLT00000003131
44510392 - 44554566
44175