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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44549463_44553387_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44549463 - 44553387
Intron Length:
3925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TTCTTTTTACCA
Flanking Amino Acid:
DHSPTPSVFNSDEERYRYRD
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.1
76.2
32.9
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
86
0.81
0.8
81.3
35
Minor 5ss
29.3
-2.4
2.9
33.7
41.5
Minor BPS
64.7
0.46
1.6
73.92
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003042
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041552
44509397 - 44554574
45178
ENSAPLT00000017943
44510392 - 44554389
43998
ENSAPLT00000003131
44510392 - 44554566
44175