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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44556146_44556885_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44556146 - 44556885
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TCCTATTTACCT
Flanking Amino Acid:
GTPAYNDGRIRCGDILLAVN
Intron Amino Acid Position:
735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
80.6
33.4
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
35.9
-1.6
3.2
48.7
47.1
Minor BPS
54.9
0.23
1.8
72
45.3

Associated Gene:

Gene:
LNX1
Ensembl Gene ID:
ENSAPLG00000003420
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027814
44556073 - 44632418
76346
ENSAPLT00000018078
44556073 - 44632418
76346
ENSAPLT00000003484
44556010 - 44632890
76881