About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44557045_44563780_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44557045 - 44563780
Intron Length:
6736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTAACCATAAGA
Flanking Amino Acid:
PSWVMWLGLPRYLYSCKEII
Intron Amino Acid Position:
682

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68
38.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.7
0.76
0.9
81.2
36.5
Minor 5ss
29.5
-2.3
2.7
34.5
41
Minor BPS
54.7
0.14
2
70.36
41.2

Associated Gene:

Gene:
LNX1
Ensembl Gene ID:
ENSAPLG00000003420
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018078
44556073 - 44632418
76346
ENSAPLT00000003484
44556010 - 44632890
76881
ENSAPLT00000027814
44556073 - 44632418
76346