About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44565559_44571112_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44565559 - 44571112
Intron Length:
5554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCATCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
TTTTCCCCATCA
Flanking Amino Acid:
CPAARNNPCKNTLHAVTCHE
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
75.1
0.56
0.8
68.8
30.1
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
53.9
0.12
2.1
76.79
40

Associated Gene:

Gene:
LNX1
Ensembl Gene ID:
ENSAPLG00000003420
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027814
44556073 - 44632418
76346
ENSAPLT00000018078
44556073 - 44632418
76346
ENSAPLT00000003484
44556010 - 44632890
76881