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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44587001_44588524_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44587001 - 44588524
Intron Length:
1524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGAATG
5'SS Class:
major
3'SS Sequence:
CCTGCTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TATTGATTAATT
Flanking Amino Acid:
GDLHRSNRSRTRHFERSTIR
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
69.2
41.7
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
74.9
0.56
0.9
68.1
37.5
Minor 5ss
38.4
-1.3
3
46.2
42.8
Minor BPS
61.8
0.45
2
82.44
38.8

Associated Gene:

Gene:
LNX1
Ensembl Gene ID:
ENSAPLG00000003420
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003484
44556010 - 44632890
76881
ENSAPLT00000027814
44556073 - 44632418
76346
ENSAPLT00000018078
44556073 - 44632418
76346