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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44588767_44617825_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44588767 - 44617825
Intron Length:
29059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
CCCTTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTGTTCTCACTT
Flanking Amino Acid:
RGHLEQHFQTQCKGASHYGL
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77.2
0.61
0.7
72.1
26
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
55.2
0.24
1.8
75.27
42.3

Associated Gene:

Gene:
LNX1
Ensembl Gene ID:
ENSAPLG00000003420
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018078
44556073 - 44632418
76346
ENSAPLT00000003484
44556010 - 44632890
76881
ENSAPLT00000027814
44556073 - 44632418
76346