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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44748073_44755999_F

Intron Information:

Intron Rank:
123293
Intron Class:
major
Intron Phase:
Intron Coordinates:
44748073 - 44755999
Intron Length:
7927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGCAAT
5'SS Class:
major
3'SS Sequence:
ACTTTCTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATTCTTTCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
72.7
38.2
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
78.1
0.63
0.8
69.9
36
Minor 5ss
43.6
-0.7
3
63.6
42
Minor BPS
48.3
-0
1.9
71.47
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016470
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047887
44734737 - 44756132
21396