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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44760125_44762154_F

Intron Information:

Intron Rank:
143296
Intron Class:
major
Intron Phase:
Intron Coordinates:
44760125 - 44762154
Intron Length:
2030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.3
36.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
50.9
0.03
2.3
65.5
45.7
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027190
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029468
44759448 - 44762651
3204