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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44788659_44791586_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44788659 - 44791586
Intron Length:
2928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AATCTCTTAAAT
Flanking Amino Acid:
KCETNNMMEYVILIEFLPKT
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.8
0.85
0.8
84
29.9
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
67.7
0.63
1.4
78.58
36.6

Associated Gene:

Gene:
CHIC2
Ensembl Gene ID:
ENSAPLG00000022741
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045423
44788608 - 44813161
24554