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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44795218_44805137_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44795218 - 44805137
Intron Length:
9920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
ATGCATATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
CCATTCACAAGT
Flanking Amino Acid:
MWPVICLSKRVRHCRKGPCG
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
68.7
39.1
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
69.7
0.44
1
59.4
45.2
Minor 5ss
40.8
-1
2.8
45.7
43.5
Minor BPS
43.2
-0.4
2
57.18
45.4

Associated Gene:

Gene:
CHIC2
Ensembl Gene ID:
ENSAPLG00000022741
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022548
44795092 - 44813161
18070