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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44866358_44869155_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44866358 - 44869155
Intron Length:
2798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
CTTTCTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
GCTTATTAACTG
Flanking Amino Acid:
PLLVGSQRLALSVAMGTSPR
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
75.4
34.4
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
86.2
0.81
0.8
84.1
30.8
Minor 5ss
35.4
-1.7
3.5
54.7
43.6
Minor BPS
41.6
-0.7
2
43.98
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003497
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003660
44866322 - 44893912
27591