About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44873685_44874463_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44873685 - 44874463
Intron Length:
779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTAAAT
U12 Branch Point Sequence:
TACTCTTTCTCT
Flanking Amino Acid:
SDVFLIYILRATSQLPVEIE
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
61
0.27
1.1
67.3
35.2
Major PPT
82.7
0.73
0.7
81.3
23.7
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
43
-0.4
3.6
72.42
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003497
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003660
44866322 - 44893912
27591