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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44876192_44876294_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44876192 - 44876294
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATAGTCT
5'SS Class:
major
3'SS Sequence:
TTTTCATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACTTTTTCATTT
Flanking Amino Acid:
ENKKVVITVHDKGFIHLEPQ
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.1
60.8
38.2
Major BPS
100
1.24
0.5
100
0
Major PPT
90.2
0.9
0.7
85.3
28
Minor 5ss
45
-0.5
3.2
62
44.8
Minor BPS
48.4
-0
1.7
65.38
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003497
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003660
44866322 - 44893912
27591