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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44878695_44879164_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44878695 - 44879164
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTTTG
5'SS Class:
major
3'SS Sequence:
TGTTACTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
GTTTTGTTACTC
Flanking Amino Acid:
VTRELKLVAPTLRSELTVAA
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
68.9
38.5
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
75.9
0.58
0.9
69.2
36.7
Minor 5ss
40.6
-1.1
3
54.8
43.4
Minor BPS
48.8
-0.1
2.2
66
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003497
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003660
44866322 - 44893912
27591