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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44879260_44879366_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44879260 - 44879366
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTAG
5'SS Class:
major
3'SS Sequence:
ATATGTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTGCCTTCAATA
Flanking Amino Acid:
LIVLVIIWKQKPRYEIRWRV
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.2
65.8
42.7
Major BPS
76.8
0.67
1
66
40.9
Major PPT
76.8
0.6
0.9
70.3
40.5
Minor 5ss
48.7
-0.1
2.6
64.1
47.4
Minor BPS
60.2
0.32
1.5
68.87
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003497
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003660
44866322 - 44893912
27591