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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44883764_44884225_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44883764 - 44884225
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GCTCTTTCAACA
Flanking Amino Acid:
VMKVAVKMLKPTARSSEKQA
Intron Amino Acid Position:
647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1.2
84
30.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
73.9
0.54
0.9
69.3
35.7
Minor 5ss
43.2
-0.7
2.9
57.4
40.7
Minor BPS
53.1
0.1
1.5
61.23
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003497
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003660
44866322 - 44893912
27591