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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44884337_44884577_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44884337 - 44884577
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTGCCTTATTT
Flanking Amino Acid:
VNLLGACTKSGPIYIITEYC
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
78.7
0.65
0.9
78.2
34.8
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
71
0.74
1.7
87.57
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003497
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003660
44866322 - 44893912
27591