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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44886206_44887321_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44886206 - 44887321
Intron Length:
1116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAG
5'SS Class:
major
3'SS Sequence:
TCTTTTTCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACATAT
U12 Branch Point Sequence:
TCTTTTTCAATA
Flanking Amino Acid:
PASYKKKSLSESEVKNLLSD
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
57.6
0.19
1
53
33.7
Major PPT
79.8
0.67
0.8
77.7
29.7
Minor 5ss
36.1
-1.6
3.2
46.5
48.8
Minor BPS
62.5
0.39
1.5
70.41
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003497
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003660
44866322 - 44893912
27591