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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44891123_44891847_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44891123 - 44891847
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTTT
5'SS Class:
major
3'SS Sequence:
TGAATATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTGAAATGAATA
Flanking Amino Acid:
ESLLPGEYKKSYEKIHLDFL
Intron Amino Acid Position:
977

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
81.7
32.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
74.4
0.55
1
70.3
44.4
Minor 5ss
48.6
-0.1
2.4
67.6
43.4
Minor BPS
46.2
-0.2
1.9
59.62
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003497
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003660
44866322 - 44893912
27591