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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44991665_44995067_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44991665 - 44995067
Intron Length:
3403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACAG
5'SS Class:
major
3'SS Sequence:
AATTGTTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CATTTATAAATT
Flanking Amino Acid:
SEHIFLNVRPVHKALPVITL
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
62.5
43.8
Major BPS
78.6
0.71
1
78.6
31
Major PPT
79.4
0.66
0.9
70
45
Minor 5ss
36.9
-1.5
3.1
47.4
48
Minor BPS
49.8
0.06
1.9
69.42
42

Associated Gene:

Gene:
KIT
Ensembl Gene ID:
ENSAPLG00000004054
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035304
44969990 - 45022541
52552
ENSAPLT00000018807
44989590 - 45022541
32952
ENSAPLT00000004290
44969990 - 45022541
52552