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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44995205_44998389_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44995205 - 44998389
Intron Length:
3185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTACCGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTTTTTACCG
Flanking Amino Acid:
QASWISHKSGIVTSKSRNLG
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
34.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77.8
0.62
1
74.1
35.7
Minor 5ss
35.6
-1.6
2.8
36.8
40.4
Minor BPS
61.4
0.22
1.7
67.13
41

Associated Gene:

Gene:
KIT
Ensembl Gene ID:
ENSAPLG00000004054
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035304
44969990 - 45022541
52552
ENSAPLT00000018807
44989590 - 45022541
32952
ENSAPLT00000004290
44969990 - 45022541
52552