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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_44998550_45001410_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44998550 - 45001410
Intron Length:
2861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATAGT
5'SS Class:
strong_major
3'SS Sequence:
TTATGACCATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
CTTTTCCTATTA
Flanking Amino Acid:
TNATVTLKALAKGFVRLLAT
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
67.4
0.39
1
64.8
41.3
Minor 5ss
36.8
-1.5
2.9
51.6
44.9
Minor BPS
50.6
0.01
1.9
67.11
40

Associated Gene:

Gene:
KIT
Ensembl Gene ID:
ENSAPLG00000004054
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035304
44969990 - 45022541
52552
ENSAPLT00000018807
44989590 - 45022541
32952
ENSAPLT00000004290
44969990 - 45022541
52552