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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45002304_45006731_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45002304 - 45006731
Intron Length:
4428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GTGTTTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
GTTCCCATAAAA
Flanking Amino Acid:
SSVTFNVYVKTKPEILTLDI
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
78.7
0.65
1
72.9
42.2
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
59.8
0.3
1.8
72.76
37.9

Associated Gene:

Gene:
KIT
Ensembl Gene ID:
ENSAPLG00000004054
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035304
44969990 - 45022541
52552
ENSAPLT00000018807
44989590 - 45022541
32952
ENSAPLT00000004290
44969990 - 45022541
52552