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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45008261_45009381_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45008261 - 45009381
Intron Length:
1121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTCT
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TGGTATTCAAGC
Flanking Amino Acid:
SSAFFNFAIKEQIRTHTLFT
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
67.6
37.9
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
88.8
0.87
0.7
81
36.6
Minor 5ss
45.5
-0.5
3.1
65.8
45.4
Minor BPS
45.9
-0.3
2
56.12
42.3

Associated Gene:

Gene:
KIT
Ensembl Gene ID:
ENSAPLG00000004054
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035304
44969990 - 45022541
52552
ENSAPLT00000018807
44989590 - 45022541
32952
ENSAPLT00000004290
44969990 - 45022541
52552