About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45009489_45009580_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45009489 - 45009580
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAG
U12 Branch Point Sequence:
AGCTTCAGGAGT
Flanking Amino Acid:
VMILVYIYLQKPKYEVQWKV
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
73.8
30.8
Major BPS
48.3
-0.1
1.7
59.3
47.1
Major PPT
90.3
0.91
0.6
88.3
21.3
Minor 5ss
37.6
-1.4
3.1
48.6
47.1
Minor BPS
41.4
-0.5
1.9
55.21
40.6

Associated Gene:

Gene:
KIT
Ensembl Gene ID:
ENSAPLG00000004054
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035304
44969990 - 45022541
52552
ENSAPLT00000018807
44989590 - 45022541
32952
ENSAPLT00000004290
44969990 - 45022541
52552