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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45010070_45010156_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45010070 - 45010156
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TTTTGCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
ATTTACTGAACA
Flanking Amino Acid:
AMTVAVKMLKPSAHLTEREA
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.3
73.2
39.3
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
89.9
0.9
0.7
84.7
30.1
Minor 5ss
41.9
-0.9
2.8
51.9
38.5
Minor BPS
69.2
0.6
1.6
80.38
34.4

Associated Gene:

Gene:
KIT
Ensembl Gene ID:
ENSAPLG00000004054
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035304
44969990 - 45022541
52552
ENSAPLT00000018807
44989590 - 45022541
32952
ENSAPLT00000004290
44969990 - 45022541
52552