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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45020796_45021974_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45020796 - 45021974
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGGCTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
CTGCAGGGAACT
Flanking Amino Acid:
EQQLSDSAPRVYANFSTPPS
Intron Amino Acid Position:
924

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
79.3
0.66
0.9
73.5
37
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
35.9
-0.9
2.5
54.96
46.4

Associated Gene:

Gene:
KIT
Ensembl Gene ID:
ENSAPLG00000004054
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035304
44969990 - 45022541
52552
ENSAPLT00000018807
44989590 - 45022541
32952
ENSAPLT00000004290
44969990 - 45022541
52552