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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45022083_45022349_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45022083 - 45022349
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTGAA
5'SS Class:
major
3'SS Sequence:
TGTGTATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ATTTGCTATATT
Flanking Amino Acid:
SSTSSTQPLL*
Intron Amino Acid Position:
960

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
70.5
35.4
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
80.2
0.68
0.9
73.8
40.8
Minor 5ss
31.1
-2.2
3.3
36.8
42.9
Minor BPS
47.8
-0
2.3
73.77
43.4

Associated Gene:

Gene:
KIT
Ensembl Gene ID:
ENSAPLG00000004054
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035304
44969990 - 45022541
52552