About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45087171_45087957_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45087171 - 45087957
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTCCTTCCATT
Flanking Amino Acid:
ERDKEVKIPFSTLVPSKSNE
Intron Amino Acid Position:
1273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
79
0.72
1
69
38.9
Major PPT
86
0.81
0.8
80.4
31.6
Minor 5ss
29.9
-2.3
3.4
41
45.6
Minor BPS
52
0.14
2
77.39
39.6

Associated Gene:

Gene:
KDR
Ensembl Gene ID:
ENSAPLG00000005535
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005923
45086554 - 45114125
27572