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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45088246_45089922_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45088246 - 45089922
Intron Length:
1677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTTTAT
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGGAT
U12 Branch Point Sequence:
TGGACGCTAAGT
Flanking Amino Acid:
KFHYDNTAGISQYRQGSKRK
Intron Amino Acid Position:
1211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.6
31.1
Major BPS
56.3
0.16
1.5
57.1
49.4
Major PPT
86.6
0.82
0.7
85.4
29.4
Minor 5ss
48
-0.2
2.5
66.9
44.3
Minor BPS
41.9
-0.5
2.5
62.1
47.2

Associated Gene:

Gene:
KDR
Ensembl Gene ID:
ENSAPLG00000005535
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005923
45086554 - 45114125
27572