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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45104749_45105941_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45104749 - 45105941
Intron Length:
1193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
TCTTATCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTCTTCTTATCT
Flanking Amino Acid:
QLEEECTFSPQKVRSGANPY
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1
60.7
38.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.9
0.74
0.8
80.8
30.8
Minor 5ss
29.8
-2.3
3.2
40.1
40
Minor BPS
66
0.58
1.6
78.81
43.9

Associated Gene:

Gene:
KDR
Ensembl Gene ID:
ENSAPLG00000005535
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005923
45086554 - 45114125
27572