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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45107090_45107202_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45107090 - 45107202
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGAGCAT
U12 Branch Point Sequence:
TTTTTTTTGTTT
Flanking Amino Acid:
FKGYPPPEAKWYKNGKAINA
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
80.7
31.6
Major BPS
45.8
-0.2
1.4
51.5
43.9
Major PPT
85.4
0.8
0.7
81.6
30.4
Minor 5ss
38.2
-1.3
3.1
49.9
40.6
Minor BPS
46.8
-0.1
3.4
81.5
34.7

Associated Gene:

Gene:
KDR
Ensembl Gene ID:
ENSAPLG00000005535
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005923
45086554 - 45114125
27572