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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45109314_45110191_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45109314 - 45110191
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAATAT
U12 Branch Point Sequence:
TACCCCTCAATA
Flanking Amino Acid:
QSVIYIVAVVGYRIYDLTMN
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
74.1
38.3
Major BPS
54.9
0.12
1.2
51.6
42.3
Major PPT
89
0.88
0.6
81.6
30.5
Minor 5ss
37.2
-1.4
3
47
48.3
Minor BPS
60.4
0.32
1.6
66.55
39.8

Associated Gene:

Gene:
KDR
Ensembl Gene ID:
ENSAPLG00000005535
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005923
45086554 - 45114125
27572