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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4516422_4525702_F

Intron Information:

Intron Rank:
124391
Intron Class:
major
Intron Phase:
Intron Coordinates:
4516422 - 4525702
Intron Length:
9281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGCAA
5'SS Class:
major
3'SS Sequence:
CTCTCTTCAGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTTCTGACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
60.3
39.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
72.8
0.51
0.8
70.2
29.1
Minor 5ss
36.2
-1.6
3.2
47.1
48.3
Minor BPS
63.6
0.51
1.7
84.15
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017070
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030341
4420378 - 4526174
105797