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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45164325_45166778_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45164325 - 45166778
Intron Length:
2454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
AGAACATTAAGT
Flanking Amino Acid:
AWLRRCQVPKRWFTHFYIVS
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
67.7
0.44
1
58
38.9
Major PPT
82.2
0.72
0.8
76.9
32
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
49.3
0.03
1.9
66.63
43.1

Associated Gene:

Gene:
SRD5A3
Ensembl Gene ID:
ENSAPLG00000007156
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007417
45164113 - 45169887
5775