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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45169030_45169516_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45169030 - 45169516
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTGTTCTGAGCT
Flanking Amino Acid:
ILSNLRKSKSGKVVSLSHSI
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
83.4
0.75
0.9
77.3
37
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
61.7
0.44
1.7
80.52
41.3

Associated Gene:

Gene:
SRD5A3
Ensembl Gene ID:
ENSAPLG00000007156
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007417
45164113 - 45169887
5775