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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45176244_45179087_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45176244 - 45179087
Intron Length:
2844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGTCTTTTATC
Flanking Amino Acid:
LTTIVLAAREDPYGVAVGGT
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.2
0.75
0.7
81.5
29.3
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
65.6
0.47
1.6
73.85
37.7

Associated Gene:

Gene:
TMEM165
Ensembl Gene ID:
ENSAPLG00000024898
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032390
45175283 - 45179201
3919