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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45197548_45198461_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45197548 - 45198461
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGATT
5'SS Class:
strong_major
3'SS Sequence:
GCCAGTGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TAATTTATACAT
Flanking Amino Acid:
TLQLQSNVSQFSAQLGAMQH
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
84.2
33.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
65.9
0.36
1
60.6
44.7
Minor 5ss
44.3
-0.6
3.2
65.5
45.8
Minor BPS
45.5
-0.2
1.9
63.76
40.3

Associated Gene:

Gene:
CLOCK
Ensembl Gene ID:
ENSAPLG00000007176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007535
45188113 - 45221371
33259