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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45200075_45200935_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45200075 - 45200935
Intron Length:
861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
ATCAGATAAAAT
Flanking Amino Acid:
ESLPEIKTDKSQDSGSDNHI
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.5
28.9
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
81
0.7
0.9
77.8
36.7
Minor 5ss
33.5
-1.9
3.3
43.7
38.1
Minor BPS
40.1
-0.6
2.2
57.45
44.8

Associated Gene:

Gene:
CLOCK
Ensembl Gene ID:
ENSAPLG00000007176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007535
45188113 - 45221371
33259