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Intron Name: Anas_platyrhynchos_platyrhynchos_4_45201012_45201231_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

45201012 - 45201231

Intron Length:

220

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCTTCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGTTAT

U12 Branch Point Sequence:

GCAGTTATACTT

Flanking Amino Acid:

EFIVCTHTVVSYAEVRAERR

Intron Amino Acid Position:

377

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

99.2

1.16

0.6

9.5

Major BPS

61.2

0.28

1.2

42.8

Major PPT

87.3

0.84

0.6

81.2

30.9

Minor 5ss

46.1

-0.4

2.8

66.9

44.4

Minor BPS

40.4

-0.6

1.7

48.98

Associated Gene:

Gene:

CLOCK

Ensembl Gene ID:

ENSAPLG00000007176

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007535

45188113 - 45221371

33259