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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45201380_45202038_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45201380 - 45202038
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTCACTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTATTTTTCACT
Flanking Amino Acid:
LDNLAKCHEHLMQYGKGKSC
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
72.6
38.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81
0.7
0.8
76.1
32.4
Minor 5ss
36.5
-1.5
2.9
48.4
41.7
Minor BPS
66.1
0.59
1.7
83.9
37.2

Associated Gene:

Gene:
CLOCK
Ensembl Gene ID:
ENSAPLG00000007176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007535
45188113 - 45221371
33259