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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45202146_45202356_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45202146 - 45202356
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCAATTC
5'SS Class:
major
3'SS Sequence:
CTTTATTAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
TCTTTATTAATT
Flanking Amino Acid:
LEWKFLFLDHRAPPIIGYLP
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1
65.5
35
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
70.7
0.47
1
71.4
38.3
Minor 5ss
35.3
-1.7
3.4
50
46.5
Minor BPS
70.6
0.73
1.5
84.39
36.6

Associated Gene:

Gene:
CLOCK
Ensembl Gene ID:
ENSAPLG00000007176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007535
45188113 - 45221371
33259