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Intron Name: Anas_platyrhynchos_platyrhynchos_4_45202440_45206110_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

45202440 - 45206110

Intron Length:

3671

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGAAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTACTTCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTTTTTTTACTT

Flanking Amino Acid:

VRLATPQFIKEMCTVEEPNE

Intron Amino Acid Position:

265

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.78

0.9

73.4

37.3

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

82.4

0.73

0.7

81.5

Minor 5ss

38.9

-1.2

2.8

49.3

46.5

Minor BPS

70.1

0.71

1.5

86.64

33.8

Associated Gene:

Gene:

CLOCK

Ensembl Gene ID:

ENSAPLG00000007176

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007535

45188113 - 45221371

33259