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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45206230_45208371_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45206230 - 45208371
Intron Length:
2142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TATAATCTATGT
Flanking Amino Acid:
FIGNFKCLNNVPNSAHNGFE
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
79.7
0.67
0.8
77.5
31.3
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
39.9
-0.6
2.1
59.6
43.4

Associated Gene:

Gene:
CLOCK
Ensembl Gene ID:
ENSAPLG00000007176
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007535
45188113 - 45221371
33259